Name: Balleza E, Kim Mark J, Cluzel P Systematic characterization of maturation time of fluorescent proteins in living cells. nature methods. <i><a href="https://www.nature.com/articles/nmeth.4509
pubmed: 
pdf: 
si: 
dat1: 
dat2: 
news1: 
arXiv:


Name: Remy G, Cluzel P, Near-criticality underlies the behavior of early tumor growth.  <i><a href="http://iopscience.iop.org/article/10.1088/1478-3975/13/2/026005">Physical Biology </a></i>. 13. doi:10.1088/1478-3975/13/2/026005 (2016)
pubmed: 
pdf: documents/Remy.pdf
si: documents/RemySupplementary_Information_3.pdf
dat1: 
dat2: 
news1: 
arXiv:


Name: Motta SS, Cluzel P, Aldana M. Adaptive Resistance in Bacteria Requires Epigenetic Inheritance, Genetic Noise, and Cost of Efflux Pumps. <i><a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0118464"> PLoS ONE</a></i>. 10(3): e0118464. doi:10.1371/journal.pone.0118464 (2015)
pubmed: www.ncbi.nlm.nih.gov/pubmed/25781931
pdf: documents/Cluzel PlosOne 2015.pdf
si: 
dat1: 
dat2: 
news1: 
arXiv:

Name: Kevin B. Wood, Kris C. Wood, Satoshi Nishida, Philippe Cluzel. Uncovering scaling laws to infer multi-drug response of resistant microbes and cancer cells, <i><a href="http://www.cell.com/cell-reports/abstract/S2211-1247(14)00086-2"> Cell Reports</a></i>. 6 (4): (2014)
pubmed: www.ncbi.nlm.nih.gov/pubmed/24613352
pdf: documents/Cluzel Cell 2014.pdf
si: documents/Cell_SI.pdf
dat1: 
dat2: 
news1: 
arXiv: 
 
Name: Subramaniam A.R., Pan T., and Cluzel P. Environmental perturbations lift the degeneracy of the genetic code to regulate protein levels in bacteria, <i><a href="http://www.pnas.org/content/110/6/2419.abstract"> PNAS</a></i> ; 110 (6): 2419-2424, (2013).
pubmed: www.ncbi.nlm.nih.gov/pubmed/23277573
pdf: documents/Subramaniam et al., PNAS.pdf 
si: documents/Subramaniam et al., PNAS- SI.pdf
dat1: documents/Subramaniam et al., PNAS- Dataset1.txt
dat2: documents/Subramaniam et al., PNAS- Dataset2.txt
news1: 
news2: subramaniamPNAShighlights.php
arXiv: arxiv.org/abs/1212.1537

Name: Wood K., Nishida S., Sontag E.D., and Cluzel P. Mechanism-independent method for predicting response to multidrug combinations in bacteria, <i><a href="http://www.pnas.org/content/early/2012/07/03/1201281109.abstract"> PNAS</a></i> ; 109 (30): 12254-9, (2012).
pubmed: www.ncbi.nlm.nih.gov/pubmed/22773816
pdf: documents/Wood et al., PNAS, 2012.pdf
si: documents/Wood et al., PNAS, 2012- SI.pdf
dat1: documents/Wood et al., PNAS, 2012- Data.xls
dat2:
news1: 
news2: woodPNAShighlights.php
arXiv:
  
Name: Wood K. and Cluzel P. Trade-offs between drug toxicity and benefit in the multi-antibiotic resistance system underlie optimal growth of <i>E. coli</i>, <i><a href="http://www.biomedcentral.com/1752-0509/6/48">BMC Systems Biology</a></i> ; 6(1): 48, (2012).
pubmed: www.ncbi.nlm.nih.gov/pubmed/22631053
pdf: documents/Wood and Cluzel, 2012, BMC Sys Biol.pdf
si: documents/Wood and Cluzel, 2012, BMC Sys Biol-SI.pdf
dat1:
dat2:
news1:
news2:
arXiv: 

Name: Moffitt J., Lee J.B., and Cluzel P. The single-cell chemostat: an agarose-based, microfluidic device for high-throughput, single-cell studies of bacteria and bacterial communities, <i><a href="http://pubs.rsc.org/en/content/articlelanding/2012/lc/c2lc00009a">Lab on a Chip</a></i> ; 12(8): 1487-1494, (2012).
pubmed: www.ncbi.nlm.nih.gov/pubmed/22395180
pdf: documents/Moffitt, Lee, Cluzel, 2012, Lab on a Chip.pdf
si: documents/Moffitt, Lee, Cluzel, 2012, Lab on a Chip- SI.pdf
dat1:
dat2:
news1:
news2:
arXiv:

Name: Park H., Oikonomou P., Guet C.C., and Cluzel P. Noise underlies switching behavior of the bacterial flagellum, <i><a href="http://www.cell.com/biophysj/abstract/S0006-3495%2811%2901131-3">Biophysical Journal</a></i> ; 101(10): 2336-40. (2011).
pubmed: www.ncbi.nlm.nih.gov/pubmed/22098731
pdf: documents/Park et al, 2011, Biophys J.pdf
si: documents/Park et al, 2011, Biophys J, SI.pdf
dat1:
dat2:
news1:
news2:
arXiv:

Name: Park H., Pontius W., Guet C.C., Marko J.F., Emonet T. and Cluzel P. Interdependence of behavioural variability and response to small stimuli in bacteria, <i><a href="http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09551.html">Nature</a></i> ; 468(7325): 819-23, (2010).  
pubmed: www.ncbi.nlm.nih.gov/pubmed/21076396
pdf: documents/Park et al. Nature 2010.pdf
si: documents/Parketal_Nature_2010_SI.pdf
dat1:
dat2:
news1: www.mcb.harvard.edu/mcb/news/news-detail/3595/how-to-infer-cellular-response-to-a-small-stimulus-from-behavioral-variability-before-stimulus-in-bacteria/
news2:
arXiv:

Name: Park H., Guet C.C., Emonet T. and Cluzel P. Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay, <i><a href="http://www.springerlink.com/content/r6hn08n923513362/">Current Microbiology</a></i> ; 62(3): 764-9, (2011). 
pubmed: www.ncbi.nlm.nih.gov/pubmed/20972792
pdf: documents/Parketal_CurrentMicrobiology_2010.pdf 
si: documents/Parketal_CurrentMicrobiology_2010_SI.pdf
dat1:
dat2:
news1:
news2:
arXiv:

Name: Guet C., Bruneaux L., Min T.L., Siegal-Gaskins D., Figueroa I., Emonet T. and Cluzel P. Minimally invasive determination of mRNA concentration in single living bacteria, <a href="http://nar.oxfordjournals.org/cgi/content/full/gkn329v1/"><i>Nucleic Acids Research</i></a> ; 36(12):e73, (2008). 
pubmed: www.ncbi.nlm.nih.gov/pubmed/18515347
pdf: documents/guet_Minimally_invasive_determination_of_mRNA.pdf
si:  documents/guet_Minimally_invasive_determination_of_mRNA_SI.pdf
dat1: documents/guet_Minimally_invasive_determination_of_mRNA_NAR_plots_data.xls
dat2:
news1:
news2:
arXiv:

Name: Emonet T. and Cluzel P. Relationship between cellular response and behavioral variability in bacterial chemotaxis, <a href="http://www.pnas.org/cgi/content/abstract/105/9/3304"><i>PNAS</i></a> ; 105 (9), 3304-3309, (2008). 
pubmed: www.ncbi.nlm.nih.gov/pubmed/18299569
pdf: documents/Emonet_Relationship.pdf
si: documents/Emonet_Relationship_SI.pdf
dat1:
dat2:
news1:
news2:
arXiv:

Name: Oikonomou P. and Cluzel P. Effects of topology on network evolution, <a href="http://www.nature.com/nphys/journal/v2/n8/abs/nphys359.html"><i>Nature Physics</i></a> ; 2 (8), 532-536, (2006). 
pubmed:
pdf: documents/Oikonomou_nphys_06.pdf
si: documents/Oikonomou_nphys_06_SI.pdf
dat1:
dat2:
news1: www-news.uchicago.edu/releases/06/060807.networks.shtml
news2:
arXiv:

Name: Le TT, Emonet T., Harlepp S., Guet CC, Cluzel P. Dynamical determinants of inducible gene expression in a single bacterium, <a href="http://www.cell.com/biophysj/abstract/S0006-3495%2806%2972513-9"><i>Biophysical J.</i></a> ; 90(9):3315-21, (2006).
pubmed: www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16403646&query_hl=2&itool=pubmed_docsum
pdf: documents/Le_BPJ.pdf
si: documents/Le_BPJ_SI.pdf
dat1:
dat2:
news1: www-news.uchicago.edu/releases/05/050613.cluzel.shtml
news2:
arXiv:

Name: Korobkova E., Emonet T., Park H, Cluzel P. Hidden stochastic nature of a single bacterial motor, <a href="http://prl.aps.org/abstract/PRL/v96/i5/e058105"><i>Phys. Rev. Letters</i></a> ; 96, 58105, (2006).
pubmed: www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16486999&query_hl=2&itool=pubmed_docsum
pdf: documents/Korobkova_PRL.pdf
si:
dat1:Korobkova_PRL_data.php
dat2:
news1:
news2:
arXiv:

Name: Le TT., Guet CC., Cluzel P. Protein expression enhancement in efflux-deleted mutant bacteria, <a href="http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WPJ-4HV73GJ-1&_user=10&_coverDate=07%2F31%2F2006&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=0ca76ec1ce5e04d6fcb1547d930d5b15&searchtype=a"><i>Protein expression and purification</i></a> ; 48(1):28-31, (2006).
pubmed: www.ncbi.nlm.nih.gov/pubmed/16403646
pdf: documents/Le_PEP.pdf
si: 
dat1:
dat2:
news1:
news2:
arXiv:

Name: Emonet T., Macal CM, North MJ, Wickersham CE, Cluzel P. AgentCell: a digital single-cell assay for bacterial chemotaxis, <a href="http://bioinformatics.oxfordjournals.org/content/21/11/2714.abstract"><i>Bioinformatics</i></a> ; 21(11):2714-21, (2005).
pubmed: www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15774553&query_hl=2&itool=pubmed_docsum
pdf: documents/emonet_Bioinformatics.pdf
si:
dat1:
dat2:
news1: 
news2: emonetBIOINFORMATICShighlights.php
arXiv:

Name: Le TT, Harlepp S., Guet CC, Dittmar K, Emonet T., Pan T., Cluzel P.  Real-time RNA profiling within a single bacterium, <a href="http://www.pnas.org/content/102/26/9160.abstract"><i>PNAS</i></a> ; 28; 102 (26):9160-4, (2005).
pubmed: www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15967986&query_hl=2&itool=pubmed_docsum
pdf: documents/Le_PNAS.pdf
si: documents/Le_PNAS_SI.pdf
dat1:
dat2:
news1:
news2:
arXiv:

Name: Korobkova E., Emonet T., Vilar J., Shimizu T. & Cluzel P. From molecular noise to behavioral variability in a single bacterium, <a href="http://www.nature.com/nature/journal/v428/n6982/full/nature02404.html"><i>Nature</i></a> ; 428, 574-578, (2004).
pubmed: www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15058306&query_hl=2&itool=pubmed_docsum
pdf: documents/Korobkova_nature.pdf
si: documents/Korobkova_nature_si.pdf
dat1: Korobkova_Nature_data.php
dat2:
news1:
news2: korobokovaNATUREhighlights.php
arXiv:

Name: Aldana M. and Cluzel P. A natural class of robust networks, <a href="http://www.pnas.org/content/100/15/8710?cited-by=yes&legid=pnas;100/15/8710"><i>PNAS</i></a> ; 22;100(15):8710-4, (2003).
pubmed: www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12853565&query_hl=2&itool=pubmed_docsum
pdf: documents/aldana_PNAS.pdf
si:
dat1:
dat2:
news1: jcb.rupress.org/content/162/3/362.2.full
news2:
arXiv:

Name: Bainer R, Park H. and Cluzel P. A high-throughput capillary assay for bacterial chemotaxis, <a href="http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T30-48HY335-1&_user=10&_coverDate=10%2F31%2F2003&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_searchStrId=1516650163&_rerunOrigin=google&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=44100e5408e7c57eef896fbf268f9791&searchtype=a"><i>J Microbiol Methods</i></a> ; 55(1):315-9, (2003).
pubmed: www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14500024&query_hl=2&itool=pubmed_docsum
pdf: documents/bainer_Micromethod.pdf
si:
dat1:
dat2:
news1:
news2:
arXiv:

Name: Cluzel P., Surette M, Leibler S. An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells, <a href="http://www.sciencemag.org/cgi/content/abstract/287/5458/1652"><i>Science</i></a> ; 287: 1652-1655, (2000).
pubmed: www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10698740&query_hl=17&itool=pubmed_docsum
pdf: documents/cluzel_science_00.pdf
si:
dat1: documents/cluzel_science_00_data.txt
dat2:
news1:
news2:
arXiv:

Name: Manneville S., Cluzel P., Viovy J-L, Chatenay D, Caron F. Evidence for universal scaling behavior of a freely relaxing DNA molecule, <a href="http://iopscience.iop.org/0295-5075/36/6/413"><i>Europhysics Letters</i></a> ; 36: 413-418, (1996).
pubmed: 
pdf: documents/manneville_EPL.pdf
si:
dat1:
dat2:
news1:
news2:
arXiv:

Name: Cluzel P., Lebrun A., Heller C., Lavery R., Chatenay D., Caron F. DNA : An Extensible Molecule, <a href="http://www.sciencemag.org/cgi/content/abstract/sci;271/5250/792"><i>Science</i></a> ; 271: 792-794, (1996).
pubmed: www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8628993&query_hl=2&itool=pubmed_docsum
pdf: documents/Cluzel et al. Science 1996.pdf
si:
dat1:
dat2:
news1:
news2:
arXiv:

Name: Viovy J-L, Heller C, Caron F, Cluzel P, Chatenay D. Ultrafast sequencing of DNA by mechanical opening of the double helix: a theoretical investigation, <i>C.R. Acad. Sci. Paris</i> ; 317: 795-800, (1994).
pubmed: www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7882161&query_hl=2&itool=pubmed_docsum
pdf: documents/Viovy et al., 1994, C R Acad Sci III.pdf
si:
dat1:
dat2:
news1:
news2:
arXiv: