Publications

Journal Article
Chang C, Garcia-Alcala M, Saiz L, and Cluzel P. 2022. “Robustness of DNA looping across multiple cell divisions in individual bacteria.” PNAS. PDF SI
Guet C.C, Bruneaux L, Oikonomou P, Aldana M, and Cluzel P. 2022. “Monitoring lineages of growing and dividing bacteria reveals an inducible memory of mar operon expression.” bioRxiv. PDF
Chang C, Garcia-Alcala M, Saiz L, Vilar J, and P Cluzel. 2021. “Robustness of DNA Looping Across Multiple Divisions in Individual Bacteria.” bioRxiv. PDF SI
Goldman S, Aldana M, and Cluzel P. 2021. “Resonant Learning in Scale-free Networks.” bioRxiv. PDF SI
Pandey S, Gruenbaum A, Kanashova T, Mertins P, Cluzel P, and Chevrier N. 2020. “Pairwise Stimulations of Pathogen-Sensing Pathways Predict Immune Responses to Multiadjuvant Combinations.” Cell Systems. PDF SI
Stefano Sassi A, Garcia-Alcala M, Kim J M, Cluzel P, and Tu Y. 2020. “Filtering input fluctuations in intensity and in time underlies stochastic transcriptional pulses without feedback.” PNAS. PDF SI
Kim J M, Garcia-Alcala M, Balleza E, and Cluzel P. 2020. “Stochastic transcriptional pulses orchestrate flagellar biosynthesis in Escherichia coli.” Science Advances. PDF SI
Kim J M, Garcia-Alcala M, Balleza E, and Cluzel P. 2018. “Pulsating transcriptional dynamics generates cell-to-cell variability in E. coli flagellum synthesis.” bioRxiv. PDF SI
Balleza E, Marshall L F., Kim J. M, and Cluzel P. 2018. “Codon-dependent noise dictates cell-to-cell variability in nutrient poor environments.” bioRxiv. PDF SI
Balleza E, Kim J M, and Cluzel P. 2017. “Systematic characterization of maturation time of fluorescent proteins in living cells .” Nature Methods. PDF SI
Remy G and Cluzel P. 2016. “Near-criticality underlies the behavior of early tumor growth.” Physical Biology. PDF SI
Motta SS, Cluzel P, and Aldana M. 2015. “Adaptive Resistance in Bacteria Requires Epigenetic Inheritance, Genetic Noise, and Cost of Efflux Pumps.” PLoS ONE. PDF
Wood K B, Wood K C, Nishida S, and Cluzel P. 2014. “Uncovering scaling laws to infer multi-drug response of resistant microbes and cancer cells.” Cell Reports. PDF SI
Subramaniam A.R, Pan T, and Cluzel P. 2013. “Environmental perturbations lift the degeneracy of the genetic code to regulate protein levels in bacteria.” PNAS. PDF SI Data1 Data2
Moffitt J, Lee J.B, and Cluzel P. 2012. “The single-cell chemostat: an agarose-based, microfluidic device for high-throughput, single-cell studies of bacteria and bacterial communities.” Lab on a Chip. PDF SI
Wood K and Cluzel P. 2012. “Trade-offs between drug toxicity and benefit in the multi-antibiotic resistance system underlie optimal growth of E. coli.” BMC Systems Biology. PDF SI
Wood K, Nishida S, Sontag E.D, and Cluzel P. 2012. “Mechanism-independent method for predicting response to multidrug combinations in bacteria .” PNAS . PDF SI
Park H, Oikonomou P, Guet C.C, and Cluzel P. 2011. “Noise underlies switching behavior of the bacterial flagellum.” Biophysical Journal. PDF SI
Park H, Pontius W, Guet C.C, Marko J.F, Emonet T, and Cluzel P. 2010. “Interdependence of behavioural variability and response to small stimuli in bacteria.” Nature . PDF SI
Park H, Guet C.C, Emonet T, and Cluzel P. 2010. “Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay.” Current Microbiology . PDF SI

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